In summer 2016, Jovanović moved to Denmark and signed four-year contract with AGF.
He made his official debut for new club in the 1 fixture of the 2016–17 Danish Superliga season against SønderjyskE, played on 17 July 2016. After one collision with teammate Dino Mikanović during the 4th fixture match same season, against Esbjerg, Jovanović got a head injury and was substituted out.
In May 2017, Jovanović made a record, playing without conceded goal for 423 minutes in the Danish Superliga.

Jovanović got his first call up to the senior Serbia squad for a friendly match against Russia on 5 June 2016.